Hi, my name is

Patrick Garrett.

Scientific software for mass spectrometry.

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I'm a senior bioinformatics engineer in proteomics at LatchBio, with a PhD from Scripps Research. I build open-source Python and Rust tools for reading, processing, and searching mass spectrometry data.

Open source Python + Rust LatchBio
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01.

About Me

I'm Patrick. At LatchBio I design benchmarks that test whether AI agents can correctly analyze real mass spectrometry proteomics data. Before that I did my PhD in Bioinformatics in the Yates Lab at Scripps Research, where I built acquisition methods and analysis software for mass spectrometry-based proteomics.

I maintain a suite of open-source libraries under the tacular-omics organization for parsing, processing, and visualizing proteomics data.

Most of my tools are written in Python and Rust, and several run as Streamlit web apps so people can use them without installing anything.

~/ terminal
$ whoami
Patrick Garrett, PhD · Senior Bioinformatics Engineer @ LatchBio

$ cat about.txt
Proteomics & computational mass spectrometry.
Building open-source tools for the research community.
Based in Woodside, CA.

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02.

Experience & Education

03.

Publications

04.

Things I've Built

05.

Skills & Technologies

Languages

Python Rust JavaScript HTML / CSS SQL

Frameworks & Libraries

Streamlit PyO3 Pandas React Plotly

Tools

Git Docker Linux CI/CD PyPI
06.

Contact

Get In Touch

Questions about my tools, proteomics software, or AI benchmarks for mass spectrometry are welcome. Email is the best way to reach me.

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